Transcript: LINC00174:27

Basic information

LNCipedia transcript ID: LINC00174:27 
HGNC Gene Symbol: LINC00174    
HGNC Full Gene Name: long intergenic non-protein coding RNA 174
Ensembl Gene ID: ENSG00000179406
Ensembl Transcript ID: ENST00000640964
Location (hg38): chr7:66388635-66491456
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4039 bp
Exons: 24
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000640964.1
Alternative gene names: ENSG00000179406.7; LINC00174


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 114.3632 coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00174:27 yes no no no

Available literature

  1. Shen (2018), STAT1-mediated upregulation of lncRNA LINC00174 functions a ceRNA for miR-1910-3p to facilitate colorectal carcinoma progression through regulation of TAZ., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC00174:27
5.1 LINC00174:27
5.2 LINC00174:27