Transcript: LINC00174:13

Basic information

LNCipedia transcript ID: LINC00174:13 
LNCipedia gene ID: LINC00174
Location (hg38): chr7:66491096-66493538
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 699 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000450353; ENST00000450353.1; GS1-124K5.3-001; OTTHUMT00000344733.1; NONHSAT121188
Alternative gene names: ENSG00000223473; GS1-124K5.3; ENSG00000223473.1; OTTHUMG00000156596.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.5038 non-coding 
CPAT coding probability 2.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00174:13 no no no no

Available literature

  1. Shen (2018), STAT1-mediated upregulation of lncRNA LINC00174 functions a ceRNA for miR-1910-3p to facilitate colorectal carcinoma progression through regulation of TAZ., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SBDS-5:2
3.1 lnc-SBDS-5:2
4.0 lnc-GUSB-5:15
4.1 LINC00174:13
5.0 LINC00174:13
5.1 LINC00174:13
5.2 LINC00174:13