Transcript: LINC00115:7

Basic information

LNCipedia transcript ID: LINC00115:7 
LNCipedia gene ID: LINC00115
Location (hg38): chr1:810109-817712
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 402 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000435300; ENST00000435300.1; RP11-206L10.10-001; OTTHUMT00000007014.1; NONHSAT000147
Alternative gene names: ENSG00000240453; RP11-206L10.10; ENSG00000240453.1; OTTHUMG00000002467.1; FLJ22639


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.8646 non-coding 
CPAT coding probability 2.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00115:7 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR4F16-5:1
3.1 lnc-OR4F16-6:1
4.0 LINC00115:7
4.1 LINC00115:7
5.0 LINC00115:7
5.1 LINC00115:7
5.2 LINC00115:7