Transcript: LINC00115:5

Basic information

LNCipedia transcript ID: LINC00115:5 
LNCipedia gene ID: LINC00115
Location (hg38): chr1:826209-827506
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1298 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000536430; ENST00000536430.1; LINC00115-201
Alternative gene names: ENSG00000225880; NCRNA00115; ENSG00000225880.4; LINC00115; OTTHUMG00000141258.2; FLJ22639


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 40.2431 non-coding 
CPAT coding probability 82.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00115:5 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NOC2L-4:2
3.1 lnc-NOC2L-4:2
4.0 LINC00115:5
4.1 LINC00115:5
5.0 LINC00115:5
5.1 LINC00115:5
5.2 LINC00115:5