Transcript: LINC00111:3

Basic information

LNCipedia transcript ID: LINC00111:3 
LNCipedia gene ID: LINC00111
RefSeq ID: NR_024367
Location (hg38): chr21:41679302-41697336
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 454 bp
Exons: 3
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028749; NR_024367; NR_024367.1
Alternative gene names: XLOC_013948; linc-UMODL1-4; ; LINC00111


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.2191 non-coding 
CPAT coding probability 2.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00111:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MX1-2:2
3.1 lnc-MX1-2:2
4.0 LINC00111:3
4.1 LINC00111:3
5.0 LINC00111:3
5.1 LINC00111:3
5.2 LINC00111:3