Transcript: LINC00106:13

Basic information

LNCipedia transcript ID: LINC00106:13 
LNCipedia gene ID: LINC00106
Location (hg38): chrX:1392998-1395346
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2116 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1871:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 23.4328 non-coding 
CPAT coding probability 42.76% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00106:13 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-IL3RA-1:10
4.1 lnc-IL3RA-1:10
5.0 lnc-IL3RA-1:10
5.1 LINC00106:4
5.2 LINC00106:13