Transcript: LINC00106:12

Basic information

LNCipedia transcript ID: LINC00106:12 
LNCipedia gene ID: LINC00106
Location (hg38): chrX:1392421-1401611
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5472 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236871.2|ENCT00000463965.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 226.4296 coding 
CPAT coding probability 90.55% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00106:12 yes no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-IL3RA-1:20
5.0 lnc-IL3RA-1:20
5.1 LINC00106:3
5.2 LINC00106:12