Transcript: LINC00052:7

Basic information

LNCipedia transcript ID: LINC00052:7 
LNCipedia gene ID: LINC00052
RefSeq ID: NR_026869
Location (hg38): chr15:87576929-87579686
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1786 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00023191; ENST00000560153.1; LINC00052-002; OTTHUMT00000416151.1; NONHSAT048149; NR_026869; NR_026869.1
Alternative gene names: XLOC_011342; linc-MRPS11; ENSG00000259527.1; LINC00052; OTTHUMG00000171964.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.3209 non-coding 
CPAT coding probability 2.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00052:7 no no no no

Available literature

  1. Salameh (2017), HER3 and LINC00052 interplay promotes tumor growth in breast cancer., Oncotarget
  2. Zhu (2017), LINC00052 upregulates EPB41L3 to inhibit migration and invasion of hepatocellular carcinoma by binding miR-452-5p., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AGBL1-2:1
3.1 lnc-AGBL1-4:1
4.0 lnc-AGBL1-4:1
4.1 lnc-AGBL1-4:1
5.0 lnc-AGBL1-4:1
5.1 LINC00052:3
5.2 LINC00052:7