Transcript: LINC00051:3

Basic information

LNCipedia transcript ID: LINC00051:3 
HGNC Gene Symbol: LINC00051    
HGNC Full Gene Name: long intergenic non-protein coding RNA 51
Ensembl Gene ID: ENSG00000254008
Ensembl Transcript ID: ENST00000517704
RefSeq ID: NR_024378
Location (hg38): chr8:142198356-142209003
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1046 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000517704.1; LINC00051-001; OTTHUMT00000379474.1; NONHSAT129447; NR_024378; NR_024378.1
Alternative gene names: ENSG00000254008.1; LINC00051; OTTHUMG00000164636.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.3482 non-coding 
CPAT coding probability 15.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00051:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BAI1-2:1
4.0 LINC00051:3
4.1 LINC00051:3
5.0 LINC00051:3
5.1 LINC00051:3
5.2 LINC00051:3