Transcript: LINC-PINT:80

Basic information

LNCipedia transcript ID: LINC-PINT:80 
LNCipedia gene ID: LINC-PINT
Location (hg38): chr7:130881777-130882823
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 363 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000444003; ENST00000444003.1; AC058791.1-004; OTTHUMT00000338047.1; NONHSAT123373
Alternative gene names: ENSG00000226380; AC058791.1; ENSG00000226380.1; OTTHUMG00000043895.6; FLJ43663; PINT; LincRNA-Pint


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -193.7304 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC-PINT:80 no no no no

Available literature

  1. Persson (2015), Transcriptome analysis of controlled and therapy-resistant childhood asthma reveals distinct gene expression profiles., J. Allergy Clin. Immunol.
  2. Marín-Béjar (2013), Pint lincRNA connects the p53 pathway with epigenetic silencing by the Polycomb repressive complex 2., Genome Biol.
  3. Sauvageau (2013), Multiple knockout mouse models reveal lincRNAs are required for life and brain development., Elife
  4. Shiekhattar (2013), PINTing for p53., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLF14-1:4
3.1 lnc-KLF14-1:4
4.0 lnc-KLF14-1:4
4.1 LINC-PINT:80
5.0 LINC-PINT:80
5.1 LINC-PINT:80
5.2 LINC-PINT:80