Transcript: LINC-PINT:79

Basic information

LNCipedia transcript ID: LINC-PINT:79 
LNCipedia gene ID: LINC-PINT
Ensembl Gene ID: ENSG00000226380
Ensembl Transcript ID: ENST00000447307
Location (hg38): chr7:130881762-130913176
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 726 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447307; ENST00000447307.1; AC058791.1-003; OTTHUMT00000338046.1; NONHSAT123372; ENST00000447307.5
Alternative gene names: ENSG00000226380; AC058791.1; ENSG00000226380.1; OTTHUMG00000043895.6; ENSG00000226380.3; MIR29A; ENSG00000226380.7; ENSG00000226380.8; FLJ43663; PINT; LincRNA-Pint; ENSG00000226380.9; AC016831.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -262.6303 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC-PINT:79 no no no no

Available literature

  1. Persson (2015), Transcriptome analysis of controlled and therapy-resistant childhood asthma reveals distinct gene expression profiles., J. Allergy Clin. Immunol.
  2. Marín-Béjar (2013), Pint lincRNA connects the p53 pathway with epigenetic silencing by the Polycomb repressive complex 2., Genome Biol.
  3. Sauvageau (2013), Multiple knockout mouse models reveal lincRNAs are required for life and brain development., Elife
  4. Shiekhattar (2013), PINTing for p53., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLF14-1:3
3.1 lnc-KLF14-1:3
4.0 lnc-KLF14-1:3
4.1 LINC-PINT:79
5.0 LINC-PINT:79
5.1 LINC-PINT:79
5.2 LINC-PINT:79