Transcript: LIMD1-AS1:4

Basic information

LNCipedia transcript ID: LIMD1-AS1:4 
LNCipedia gene ID: LIMD1-AS1
RefSeq ID: NR_033947
Location (hg38): chr3:45678165-45688882
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2300 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT089400; NR_033947; NR_033947.1
Alternative gene names: ; LIMD1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.6527 non-coding 
CPAT coding probability 49.81% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LIMD1-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC6A20-1:4
4.0 LIMD1-AS1:4
4.1 LIMD1-AS1:4
5.0 LIMD1-AS1:4
5.1 LIMD1-AS1:4
5.2 LIMD1-AS1:4