Transcript: LIMD1-AS1:3

Basic information

LNCipedia transcript ID: LIMD1-AS1:3 
HGNC Gene Symbol: LIMD1-AS1    
HGNC Full Gene Name: LIMD1 antisense RNA 1
Ensembl Gene ID: ENSG00000230530
Ensembl Transcript ID: ENST00000427644
Location (hg38): chr3:45679043-45688882
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1536 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427644; ENST00000427644.1; RP11-697K23.1-001; OTTHUMT00000345062.1; NONHSAT089404
Alternative gene names: ENSG00000230530; RP11-697K23.1; ENSG00000230530.1; OTTHUMG00000156652.1; LIMD1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.6527 non-coding 
CPAT coding probability 50.86% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LIMD1-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC6A20-1:2
3.1 lnc-SLC6A20-1:2
4.0 LIMD1-AS1:3
4.1 LIMD1-AS1:3
5.0 LIMD1-AS1:3
5.1 LIMD1-AS1:3
5.2 LIMD1-AS1:3