Transcript: LGALSL-DT:12

Basic information

LNCipedia transcript ID: LGALSL-DT:12 
LNCipedia gene ID: LGALSL-DT
Location (hg38): chr2:64452719-64454390
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1672 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000223935.1|HBMT00000806235.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -35.971 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LGALSL-DT:12 no no no no

Available literature

  1. Fei (2018), Identification of aberrantly expressed long non-coding RNAs in postmenopausal osteoporosis., Int. J. Mol. Med.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SERTAD2-4:4
5.0 lnc-SERTAD2-4:4
5.1 LGALSL-DT:6
5.2 LGALSL-DT:12