Transcript: LGALS8-AS1:1

Basic information

LNCipedia transcript ID: LGALS8-AS1:1 
LNCipedia gene ID: LGALS8-AS1
RefSeq ID: NR_034040
Location (hg38): chr1:236523069-236524508
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1440 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000487567.1; LGALS8-AS1-001; OTTHUMT00000096363.1; NONHSAT010405; NR_034040; NR_034040.1
Alternative gene names: ENSG00000223776.4; LGALS8-AS1; OTTHUMG00000039952.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.7128 non-coding 
CPAT coding probability 32.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LGALS8-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HEATR1-2:1
4.0 LGALS8-AS1:1
4.1 LGALS8-AS1:1
5.0 LGALS8-AS1:1
5.1 LGALS8-AS1:1
5.2 LGALS8-AS1:1