Transcript: LEF1-AS1:6

Basic information

LNCipedia transcript ID: LEF1-AS1:6 
LNCipedia gene ID: LEF1-AS1
Location (hg38): chr4:108172620-108176486
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 737 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT097746
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.7349 non-coding 
CPAT coding probability 9.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LEF1-AS1:6 no no no no

Available literature

  1. Wang (2017), <i>LEF1-AS1</i>, a long-noncoding RNA, promotes malignancy in glioblastoma., Onco Targets Ther
  2. Wang (2016), Identification of long noncoding RNAs as potential novel diagnosis and prognosis biomarkers in colorectal cancer., J. Cancer Res. Clin. Oncol.
  3. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HADH-1:10
4.0 LEF1-AS1:6
4.1 LEF1-AS1:6
5.0 LEF1-AS1:6
5.1 LEF1-AS1:6
5.2 LEF1-AS1:6