Transcript: LCMT1-AS1:14

Basic information

LNCipedia transcript ID: LCMT1-AS1:14 
LNCipedia gene ID: LCMT1-AS1
Ensembl Gene ID: ENSG00000275494
Ensembl Transcript ID: ENST00000613406
Location (hg38): chr16:25106569-25107102
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 534 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613406.1
Alternative gene names: ENSG00000275494.1; RP11-266L9.8; ; AC133552.6; AC133552.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -15.458 non-coding 
CPAT coding probability 26.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LCMT1-AS1:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ARHGAP17-10:2
4.1 LCMT1-AS1:14
5.0 LCMT1-AS1:14
5.1 LCMT1-AS1:14
5.2 LCMT1-AS1:14