Transcript: LBX1-AS1:6

Basic information

LNCipedia transcript ID: LBX1-AS1:6 
LNCipedia gene ID: LBX1-AS1
Location (hg38): chr10:101232252-101238492
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000454527; ENST00000454527.1; RP11-107I14.1-004; OTTHUMT00000049932.1
Alternative gene names: ENSG00000227128; RP11-107I14.1; ENSG00000227128.2; OTTHUMG00000018928.1; FLJ41350


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -340.0777 non-coding 
CPAT coding probability 7.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LBX1-AS1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTRC-3:3
3.1 lnc-TLX1-2:3
4.0 LBX1-AS1:6
4.1 LBX1-AS1:6
5.0 LBX1-AS1:6
5.1 LBX1-AS1:6
5.2 LBX1-AS1:6