Transcript: LARS2-AS1:1

Basic information

LNCipedia transcript ID: LARS2-AS1:1 
HGNC Gene Symbol: LARS2-AS1    
HGNC Full Gene Name: LARS2 antisense RNA 1
Ensembl Gene ID: ENSG00000232455
Ensembl Transcript ID: ENST00000442534
Location (hg38): chr3:45483974-45509545
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 575 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442534.2; LARS2-AS1-001; OTTHUMT00000345077.2
Alternative gene names: ENSG00000232455.2; LARS2-AS1; OTTHUMG00000156654.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.3059 non-coding 
CPAT coding probability 21.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LARS2-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC6A20-2:1
4.0 LARS2-AS1:1
4.1 LARS2-AS1:1
5.0 LARS2-AS1:1
5.1 LARS2-AS1:1
5.2 LARS2-AS1:1