Transcript: LANCL1-AS1:6

Basic information

LNCipedia transcript ID: LANCL1-AS1:6 
HGNC Gene Symbol: LANCL1-AS1    
HGNC Full Gene Name: LANCL1 antisense RNA 1
Ensembl Gene ID: ENSG00000234281
Ensembl Transcript ID: ENST00000416344
Location (hg38): chr2:210460475-210469246
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 714 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416344.1; AC007970.1-003; OTTHUMT00000336825.1
Alternative gene names: ENSG00000234281.1; AC007970.1; OTTHUMG00000154735.1; ENSG00000234281.5; LANCL1-AS1; LANCLOT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.0505 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LANCL1-AS1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CPS1-1:3
4.0 LANCL1-AS1:6
4.1 LANCL1-AS1:6
5.0 LANCL1-AS1:6
5.1 LANCL1-AS1:6
5.2 LANCL1-AS1:6