Transcript: KTN1-AS1:9

Basic information

LNCipedia transcript ID: KTN1-AS1:9 
LNCipedia gene ID: KTN1-AS1
Location (hg38): chr14:55574684-55581032
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3015 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000186615.6|ENCT00000134160.1
Alternative gene names: MYCLo-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.1717 non-coding 
CPAT coding probability 41.38% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
KTN1-AS1:9 no no no no

Available literature

  1. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.
  2. Hart (2014), MYC regulates the non-coding transcriptome., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 KTN1-AS1:9
5.0 KTN1-AS1:9
5.1 KTN1-AS1:9
5.2 KTN1-AS1:9