Transcript: KTN1-AS1:5

Basic information

LNCipedia transcript ID: KTN1-AS1:5 
LNCipedia gene ID: KTN1-AS1
Location (hg38): chr14:55576158-55580092
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1379 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022371; NONHSAT037016
Alternative gene names: XLOC_011036; linc-TBPL2-3; ; MYCLo-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.1778 non-coding 
CPAT coding probability 3.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KTN1-AS1:5 no no no no

Available literature

  1. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.
  2. Hart (2014), MYC regulates the non-coding transcriptome., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBPL2-1:5
3.1 lnc-TBPL2-1:5
4.0 KTN1-AS1:5
4.1 KTN1-AS1:5
5.0 KTN1-AS1:5
5.1 KTN1-AS1:5
5.2 KTN1-AS1:5