Transcript: KTN1-AS1:20

Basic information

LNCipedia transcript ID: KTN1-AS1:20 
LNCipedia gene ID: KTN1-AS1
Location (hg38): chr14:55549340-55549918
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 579 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT037012; FPKM1_group_9019_transcript_1
Alternative gene names: MYCLo-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.7687 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KTN1-AS1:20 no no no no

Available literature

  1. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.
  2. Hart (2014), MYC regulates the non-coding transcriptome., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TBPL2-3:1
4.0 lnc-TBPL2-3:1
4.1 KTN1-AS1:20
5.0 KTN1-AS1:20
5.1 KTN1-AS1:20
5.2 KTN1-AS1:20