Transcript: KDM4A-AS1:6

Basic information

LNCipedia transcript ID: KDM4A-AS1:6 
HGNC Gene Symbol: KDM4A-AS1    
HGNC Full Gene Name: KDM4A antisense RNA 1
Ensembl Gene ID: ENSG00000236200
Ensembl Transcript ID: ENST00000434346
Location (hg38): chr1:43702097-43704469
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 833 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434346.1; RP11-184I16.2-002; OTTHUMT00000019954.1
Alternative gene names: ENSG00000236200.1; RP11-184I16.2; OTTHUMG00000007557.1; KDM4A-AS1; ENSG00000236200.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.3017 non-coding 
CPAT coding probability 19.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KDM4A-AS1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HYI-2:5
4.0 KDM4A-AS1:6
4.1 KDM4A-AS1:6
5.0 KDM4A-AS1:6
5.1 KDM4A-AS1:6
5.2 KDM4A-AS1:6