Transcript: KCNQ5-AS1:1

Basic information

LNCipedia transcript ID: KCNQ5-AS1:1 
HGNC Gene Symbol: KCNQ5-AS1    
HGNC Full Gene Name: KCNQ5 antisense RNA 1
Ensembl Gene ID: ENSG00000229154
Ensembl Transcript ID: ENST00000429832
RefSeq ID: NR_046621
Location (hg38): chr6:73134803-73143514
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1101 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000429832.1; KCNQ5-AS1-001; OTTHUMT00000041196.2; NONHSAT113535; NR_046621; NR_046621.1
Alternative gene names: ENSG00000229154.1; KCNQ5-AS1; OTTHUMG00000015018.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.7082 non-coding 
CPAT coding probability 1.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KCNQ5-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-257K9.7.1-1:1
4.0 KCNQ5-AS1:1
4.1 KCNQ5-AS1:1
5.0 KCNQ5-AS1:1
5.1 KCNQ5-AS1:1
5.2 KCNQ5-AS1:1