Transcript: JRKL-AS1:2

Basic information

LNCipedia transcript ID: JRKL-AS1:2 
LNCipedia gene ID: JRKL-AS1
Location (hg38): chr11:96494854-96506916
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 386 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00019737
Alternative gene names: XLOC_009529; linc-CCDC82-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -199.8229 non-coding 
CPAT coding probability 3.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
JRKL-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC82-1:1
3.1 lnc-CCDC82-1:1
4.0 JRKL-AS1:2
4.1 JRKL-AS1:2
5.0 JRKL-AS1:2
5.1 JRKL-AS1:2
5.2 JRKL-AS1:2