Transcript: ITGB1-DT:40

Basic information

LNCipedia transcript ID: ITGB1-DT:40 
LNCipedia gene ID: ITGB1-DT
Location (hg38): chr10:32982462-33109596
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2276 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT012667
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.9022 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITGB1-DT:40 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C10orf68-1:4
4.0 lnc-C10orf68-1:4
4.1 lnc-C10orf68-1:4
5.0 lnc-C10orf68-1:4
5.1 ITGB1-DT:17
5.2 ITGB1-DT:40