Transcript: ITGA9-AS1:29

Basic information

LNCipedia transcript ID: ITGA9-AS1:29 
HGNC Gene Symbol: ITGA9-AS1    
HGNC Full Gene Name: ITGA9 antisense RNA 1
Ensembl Gene ID: ENSG00000235257
Ensembl Transcript ID: ENST00000630762
Location (hg38): chr3:37749219-37834748
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 751 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000630762.2
Alternative gene names: ENSG00000235257.8; ITGA9-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -142.9646 non-coding 
CPAT coding probability 3.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITGA9-AS1:29 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 ITGA9-AS1:29
4.1 ITGA9-AS1:29
5.0 ITGA9-AS1:29
5.1 ITGA9-AS1:29
5.2 ITGA9-AS1:29