Transcript: ITGA9-AS1:18

Basic information

LNCipedia transcript ID: ITGA9-AS1:18 
LNCipedia gene ID: ITGA9-AS1
Location (hg38): chr3:37808723-37861720
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 475 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000429532; ENST00000429532.1; AC093415.2-008; OTTHUMT00000342357.1; NONHSAT089030
Alternative gene names: ENSG00000235257; AC093415.2; ENSG00000235257.2; OTTHUMG00000155924.1; ENSG00000235257.4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.1617 non-coding 
CPAT coding probability 12.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITGA9-AS1:18 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLCD1-1:8
3.1 lnc-PLCD1-1:7
4.0 ITGA9-AS1:18
4.1 ITGA9-AS1:18
5.0 ITGA9-AS1:18
5.1 ITGA9-AS1:18
5.2 ITGA9-AS1:18