Transcript: ITFG2-AS1:26

Basic information

LNCipedia transcript ID: ITFG2-AS1:26 
LNCipedia gene ID: ITFG2-AS1
Location (hg38): chr12:2805197-2812913
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 309 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000258325.1|FTMT24500017661.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -247.2177 non-coding 
CPAT coding probability 1.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITFG2-AS1:26 no no no no

Available literature

  1. Schein (2016), Identification of antisense long noncoding RNAs that function as SINEUPs in human cells., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-NRIP2-1:10
5.0 lnc-NRIP2-1:10
5.1 ITFG2-AS1:7
5.2 ITFG2-AS1:26