Transcript: IGFBP7-AS1:7

Basic information

LNCipedia transcript ID: IGFBP7-AS1:7 
LNCipedia gene ID: IGFBP7-AS1
Ensembl Gene ID: ENSG00000250192
Ensembl Transcript ID: ENST00000511330
Location (hg38): chr4:57154577-57156452
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 560 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007536; ENST00000511330; ENST00000511330.1; RP11-300M6.1-001; OTTHUMT00000367708.1; NONHSAT096547
Alternative gene names: XLOC_003547; linc-LPHN3-8; ENSG00000250192; RP11-300M6.1; ENSG00000250192.1; OTTHUMG00000162167.1; ; AC105390.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.7232 non-coding 
CPAT coding probability 1.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
IGFBP7-AS1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLR2B-1:3
3.1 lnc-POLR2B-1:5
4.0 IGFBP7-AS1:7
4.1 IGFBP7-AS1:7
5.0 IGFBP7-AS1:7
5.1 IGFBP7-AS1:7
5.2 IGFBP7-AS1:7