Transcript: HTR5A-AS1:4

Basic information

LNCipedia transcript ID: HTR5A-AS1:4 
HGNC Gene Symbol: HTR5A-AS1    
HGNC Full Gene Name: HTR5A antisense RNA 1
Ensembl Gene ID: ENSG00000220575
Ensembl Transcript ID: ENST00000395731
RefSeq ID: NR_038945
Location (hg38): chr7:155067067-155071557
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2703 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000395731.5; NR_038945.1
Alternative gene names: ENSG00000220575.7; HTR5A-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 636.9478 coding 
CPAT coding probability 81.36% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HTR5A-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 HTR5A-AS1:4
4.1 HTR5A-AS1:4
5.0 HTR5A-AS1:4
5.1 HTR5A-AS1:4
5.2 HTR5A-AS1:4