Transcript: HTR3E-AS1:1

Basic information

LNCipedia transcript ID: HTR3E-AS1:1 
HGNC Gene Symbol: HTR3E-AS1    
HGNC Full Gene Name: HTR3E antisense RNA 1
Ensembl Gene ID: ENSG00000238020
Ensembl Transcript ID: ENST00000431427
RefSeq ID: NR_133658
Location (hg38): chr3:184095118-184105178
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 515 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000431427.1; HTR3E-AS1-001; OTTHUMT00000346295.1; NONHSAT093677; NR_133658.1
Alternative gene names: ENSG00000238020.1; HTR3E-AS1; OTTHUMG00000156861.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.6545 non-coding 
CPAT coding probability 4.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HTR3E-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ABCC5-1:1
4.0 HTR3E-AS1:1
4.1 HTR3E-AS1:1
5.0 HTR3E-AS1:1
5.1 HTR3E-AS1:1
5.2 HTR3E-AS1:1