Transcript: HTR2A-AS1:3

Basic information

LNCipedia transcript ID: HTR2A-AS1:3 
HGNC Gene Symbol: HTR2A-AS1    
HGNC Full Gene Name: HTR2A antisense RNA 1
Ensembl Gene ID: ENSG00000224517
Ensembl Transcript ID: ENST00000455126
Location (hg38): chr13:46852143-46856299
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 294 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455126.1; HTR2A-AS1-003; OTTHUMT00000044834.1; ENST00000455126.5
Alternative gene names: ENSG00000224517.1; HTR2A-AS1; OTTHUMG00000016880.1; ENSG00000224517.2; ENSG00000224517.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HTR2A-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRCH1-4:1
4.0 HTR2A-AS1:3
4.1 HTR2A-AS1:3
5.0 HTR2A-AS1:3
5.1 HTR2A-AS1:3
5.2 HTR2A-AS1:3