Transcript: HS6ST2-AS1:1

Basic information

LNCipedia transcript ID: HS6ST2-AS1:1 
HGNC Gene Symbol: HS6ST2-AS1    
HGNC Full Gene Name: HS6ST2 antisense RNA 1
Ensembl Gene ID: ENSG00000235849
Ensembl Transcript ID: ENST00000455269
RefSeq ID: NR_046691
Location (hg38): chrX:132667642-132669888
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 550 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000455269.1; HS6ST2-AS1-001; OTTHUMT00000058328.1; NONHSAT138572; NR_046691.1
Alternative gene names: ENSG00000235849.1; HS6ST2-AS1; OTTHUMG00000022427.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.3248 non-coding 
CPAT coding probability 2.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HS6ST2-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MST4.1-2:1
4.0 HS6ST2-AS1:1
4.1 HS6ST2-AS1:1
5.0 HS6ST2-AS1:1
5.1 HS6ST2-AS1:1
5.2 HS6ST2-AS1:1