Transcript: HOXD-AS2:4

Basic information

LNCipedia transcript ID: HOXD-AS2:4 
LNCipedia gene ID: HOXD-AS2
Location (hg38): chr2:176121611-176122366
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 424 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003443; NONHSAT075628
Alternative gene names: XLOC_002403; linc-EVX2-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.6833 non-coding 
CPAT coding probability 3.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXD-AS2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC009336.1-1:1
3.1 lnc-AC009336.1-1:3
4.0 HOXD-AS2:4
4.1 HOXD-AS2:4
5.0 HOXD-AS2:4
5.1 HOXD-AS2:4
5.2 HOXD-AS2:4