Transcript: HOXC-AS2:1

Basic information

LNCipedia transcript ID: HOXC-AS2:1 
HGNC Gene Symbol: HOXC-AS2    
HGNC Full Gene Name: HOXC cluster antisense RNA 2
Ensembl Gene ID: ENSG00000250133
Ensembl Transcript ID: ENST00000513533
RefSeq ID: NR_047505
Location (hg38): chr12:53995208-53996785
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 504 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000513533.1; HOXC-AS2-001; OTTHUMT00000358951.1; NONHSAT028529; NR_047505; NR_047505.1
Alternative gene names: ENSG00000250133.1; HOXC-AS2; OTTHUMG00000160030.1; ENSG00000250133.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -227.0695 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXC-AS2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMUG1-5:1
4.0 HOXC-AS2:1
4.1 HOXC-AS2:1
5.0 HOXC-AS2:1
5.1 HOXC-AS2:1
5.2 HOXC-AS2:1