Transcript: HOXB-AS2:1

Basic information

LNCipedia transcript ID: HOXB-AS2:1 
HGNC Gene Symbol: HOXB-AS2    
HGNC Full Gene Name: HOXB cluster antisense RNA 2
Ensembl Gene ID: ENSG00000239552
Ensembl Transcript ID: ENST00000464382
Location (hg38): chr17:48557262-48560333
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 845 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000464382.2; HOXB-AS2-001; OTTHUMT00000358260.2; NONHSAT054411
Alternative gene names: ENSG00000239552.2; HOXB-AS2; OTTHUMG00000159921.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -489.4488 non-coding 
CPAT coding probability 6.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXB-AS2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CALCOCO2-7:1
4.0 HOXB-AS2:1
4.1 HOXB-AS2:1
5.0 HOXB-AS2:1
5.1 HOXB-AS2:1
5.2 HOXB-AS2:1