Transcript: HOXA11-AS:4

Basic information

LNCipedia transcript ID: HOXA11-AS:4 
HGNC Gene Symbol: HOXA11-AS    
HGNC Full Gene Name: HOXA11 antisense RNA
Ensembl Gene ID: ENSG00000240990
Ensembl Transcript ID: ENST00000522674
RefSeq ID: NR_002795
Location (hg38): chr7:27185408-27189293
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1549 bp
Exons: 2
Sources: Gencode v13; Broad Institute; Ensembl release 68 - Jul 2012; long non-coding rna db - lncrnadb.com; Ensembl release 83 - Dec 2015; Ensembl release 75 - Feb 2014; NONCODE v4; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00012847; NR_002795; HOXA11-AS-002; OTTHUMT00000095397.1; NONHSAT119704; NR_002795.2; ENST00000522674.1
Alternative gene names: HOXA11-AS; linc-EVX1-2; OTTHUMG00000158205.3; Hoxa11s; ENSG00000240990.4; ENSG00000240990.5; Hoxa11as; ENSG00000240990.9; NCRNA00076; XLOC_006025; Hoxa11os; HOXA11-AS1; HOXA11S; HOXA-AS5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.7068 non-coding 
CPAT coding probability 18.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXA11-AS:4 no no no no

Available literature

  1. Chen (2015), Systematic gene microarray analysis of the lncRNA expression profiles in human uterine cervix carcinoma., Biomed. Pharmacother.
  2. Richards (2015), A functional variant in HOXA11-AS, a novel long non-coding RNA, inhibits the oncogenic phenotype of epithelial ovarian cancer., Oncotarget
  3. Sørensen (2015), Long non-coding RNA expression profiles predict metastasis in lymph node-negative breast cancer independently of traditional prognostic markers., Breast Cancer Res.
  4. Sasaki (2007), Coordinated expression of ncRNAs and HOX mRNAs in the human HOXA locus., Biochem. Biophys. Res. Commun.
  5. Sessa (2007), Noncoding RNA synthesis and loss of Polycomb group repression accompanies the colinear activation of the human HOXA cluster., RNA
  6. Chau (2002), HOXA11 silencing and endogenous HOXA11 antisense ribonucleic acid in the uterine endometrium., J. Clin. Endocrinol. Metab.
  7. Potter (1998), Evolutionary conservation and tissue-specific processing of Hoxa 11 antisense transcripts., Mamm. Genome
  8. Hsieh-Li (1995), Hoxa 11 structure, extensive antisense transcription, and function in male and female fertility., Development


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EVX1-5:2
3.1 lnc-EVX1-5:4
4.0 HOXA11-AS:4
4.1 HOXA11-AS:4
5.0 HOXA11-AS:4
5.1 HOXA11-AS:4
5.2 HOXA11-AS:4