Transcript: HNF4A-AS1:16

Basic information

LNCipedia transcript ID: HNF4A-AS1:16 
LNCipedia gene ID: HNF4A-AS1
Location (hg38): chr20:44372032-44395662
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1338 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000229005.2|ENCT00000267147.1
Alternative gene names: uc002xlx


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -116.0352 non-coding 
CPAT coding probability 7.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HNF4A-AS1:16 yes no no no

Available literature

  1. Nielsen (2014), Identification of expressed and conserved human noncoding RNAs., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 HNF4A-AS1:16
5.0 HNF4A-AS1:16
5.1 HNF4A-AS1:16
5.2 HNF4A-AS1:16