Transcript: HNF1A-AS1:7

Basic information

LNCipedia transcript ID: HNF1A-AS1:7 
HGNC Gene Symbol: HNF1A-AS1    
HGNC Full Gene Name: HNF1A antisense RNA 1
Ensembl Gene ID: ENSG00000241388
Ensembl Transcript ID: ENST00000539163
RefSeq ID: NR_024345
Location (hg38): chr12:120969838-120972292
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2455 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000539163.1; HNF1A-AS1-001; OTTHUMT00000402491.1; NONHSAT031259; NR_024345; NR_024345.1
Alternative gene names: ENSG00000241388.2; HNF1A-AS1; OTTHUMG00000169148.1; ENSG00000241388.4; FLJ38690; ENSG00000241388.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.7369 non-coding 
CPAT coding probability 7.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HNF1A-AS1:7 no no no no

Available literature

  1. Fang (2017), Long non-coding RNA HNF1A-AS1 mediated repression of miR-34a/SIRT1/p53 feedback loop promotes the metastatic progression of colon cancer by functioning as a competing endogenous RNA., Cancer Lett.
  2. Dang (2015), Expression and clinical significance of long non-coding RNA HNF1A-AS1 in human gastric cancer., World J Surg Oncol
  3. Sugihara (2015), Noncoding RNA Expression Aberration Is Associated with Cancer Progression and Is a Potential Biomarker in Esophageal Squamous Cell Carcinoma., Int J Mol Sci
  4. Tong (2015), Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma., Mol. Cancer
  5. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  6. Wu (2015), The long non-coding RNA HNF1A-AS1 regulates proliferation and metastasis in lung adenocarcinoma., Oncotarget
  7. Yang (2014), Long non-coding RNA HNF1A-AS1 regulates proliferation and migration in oesophageal adenocarcinoma cells., Gut


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C12orf43-1:4
4.0 HNF1A-AS1:7
4.1 HNF1A-AS1:7
5.0 HNF1A-AS1:7
5.1 HNF1A-AS1:7
5.2 HNF1A-AS1:7