Transcript: HLA-F-AS1:4

Basic information

LNCipedia transcript ID: HLA-F-AS1:4 
HGNC Gene Symbol: HLA-F-AS1    
HGNC Full Gene Name: HLA-F antisense RNA 1
Ensembl Gene ID: ENSG00000214922
Ensembl Transcript ID: ENST00000458236
Location (hg38): chr6:29735028-29748993
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2835 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000458236.1; HLA-F-AS1-001; OTTHUMT00000127901.2
Alternative gene names: ENSG00000214922.3; HLA-F-AS1; OTTHUMG00000057541.2; ENSG00000214922.5; ENSG00000214922.9;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.9331 non-coding 
CPAT coding probability 54.61% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HLA-F-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZFP57-7:2
4.0 HLA-F-AS1:4
4.1 HLA-F-AS1:4
5.0 HLA-F-AS1:4
5.1 HLA-F-AS1:4
5.2 HLA-F-AS1:4