Transcript: HLA-F-AS1:2

Basic information

LNCipedia transcript ID: HLA-F-AS1:2 
LNCipedia gene ID: HLA-F-AS1
RefSeq ID: NR_026973
Location (hg38): chr6:29726601-29749049
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 689 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT108544; NR_026973; NR_026973.1
Alternative gene names: ; HLA-F-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.4308 non-coding 
CPAT coding probability 38.34% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HLA-F-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZFP57-7:4
4.0 HLA-F-AS1:2
4.1 HLA-F-AS1:2
5.0 HLA-F-AS1:2
5.1 HLA-F-AS1:2
5.2 HLA-F-AS1:2