Transcript: HIPK1-AS1:7

Basic information

LNCipedia transcript ID: HIPK1-AS1:7 
LNCipedia gene ID: HIPK1-AS1
Location (hg38): chr1:113927635-113929523
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1069 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000235527.2|ENST00000426237.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -96.9177 non-coding 
CPAT coding probability 1.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HIPK1-AS1:7 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 HIPK1-AS1:7
5.0 HIPK1-AS1:7
5.1 HIPK1-AS1:7
5.2 HIPK1-AS1:7