Transcript: HIF1A-AS1:7

Basic information

LNCipedia transcript ID: HIF1A-AS1:7 
HGNC Gene Symbol: HIF1A-AS1    
HGNC Full Gene Name: HIF1A antisense RNA 1
Ensembl Gene ID: ENSG00000258777
Ensembl Transcript ID: ENST00000557544
RefSeq ID: NR_047116
Location (hg38): chr14:61681041-61695823
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 652 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000557544; ENST00000557544.1; RP11-618G20.4-001; OTTHUMT00000411863.1; NONHSAT037272; NR_047116; NR_047116.1
Alternative gene names: ENSG00000258777; RP11-618G20.4; ENSG00000258777.1; OTTHUMG00000171134.1; HIF1A-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.758 non-coding 
CPAT coding probability 4.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HIF1A-AS1:7 yes no no no

Available literature

  1. He (2015), Long noncoding RNA HIF1A-AS1A reduces apoptosis of vascular smooth muscle cells: implications for the pathogenesis of thoracoabdominal aorta aneurysm., Pharmazie
  2. Jiang (2015), Novel insights into a treatment for aplastic anemia based on the advanced proliferation of bone marrow‑derived mesenchymal stem cells induced by fibroblast growth factor 1., Mol Med Rep
  3. Na (2015), Long non-coding RNA UCA1 contributes to the progression of prostate cancer and regulates proliferation through KLF4-KRT6/13 signaling pathway., Int J Clin Exp Med
  4. Pei (2015), Notch-1 promotes breast cancer cells proliferation by regulating LncRNA GAS5., Int J Clin Exp Med
  5. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  6. Wang (2015), BRG1 expression is increased in thoracic aortic aneurysms and regulates proliferation and apoptosis of vascular smooth muscle cells through the long non-coding RNA HIF1A-AS1 in vitro., Eur J Cardiothorac Surg
  7. Wang (2015), Clopidogrel reduces apoptosis and promotes proliferation of human vascular endothelial cells induced by palmitic acid via suppression of the long non-coding RNA HIF1A-AS1 in vitro., Mol. Cell. Biochem.
  8. Wang (2015), Serum LncRNAs Profiles Serve as Novel Potential Biomarkers for the Diagnosis of HBV-Positive Hepatocellular Carcinoma., PLoS ONE
  9. Xu (2015), Upregulation of long non-coding RNA HIF 1α-anti-sense 1 induced by transforming growth factor-β-mediated targeting of sirtuin 1 promotes osteoblastic differentiation of human bone marrow stromal cells., Mol Med Rep
  10. Zhang (2014), TET3 mediates the activation of human hepatic stellate cells via modulating the expression of long non-coding RNA HIF1A-AS1., Int J Clin Exp Pathol
  11. Zhao (2014), Regulation of apoptosis by long non-coding RNA HIF1A-AS1 in VSMCs: implications for TAA pathogenesis., Int J Clin Exp Pathol
  12. Bertozzi (2011), Characterization of novel antisense HIF-1α transcripts in human cancers., Cell Cycle


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM30B-3:1
3.1 lnc-TMEM30B-4:1
4.0 lnc-TMEM30B-4:1
4.1 lnc-TMEM30B-4:1
5.0 lnc-TMEM30B-4:1
5.1 HIF1A-AS1:4
5.2 HIF1A-AS1:7