Transcript: HAGLROS:7

Basic information

LNCipedia transcript ID: HAGLROS:7 
LNCipedia gene ID: HAGLROS
Location (hg38): chr2:176178181-176179009
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 658 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00003056
Alternative gene names: XLOC_001763; linc-HOXD1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -415.7932 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAGLROS:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HOXD3-1:2
3.1 lnc-HOXD3-1:2
4.0 HAGLROS:7
4.1 HAGLROS:7
5.0 HAGLROS:7
5.1 HAGLROS:7
5.2 HAGLROS:7