Transcript: HAGLROS:3

Basic information

LNCipedia transcript ID: HAGLROS:3 
HGNC Gene Symbol: HAGLROS    
HGNC Full Gene Name: HAGLR opposite strand lncRNA
Ensembl Gene ID: ENSG00000226363
Ensembl Transcript ID: ENST00000426615
Location (hg38): chr2:176177717-176179008
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1121 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426615.3
Alternative gene names: ENSG00000226363.3; AC009336.24; HAGLROS;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -229.2154 non-coding 
CPAT coding probability 24.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAGLROS:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HOXD3-1:4
4.0 HAGLROS:3
4.1 HAGLROS:3
5.0 HAGLROS:3
5.1 HAGLROS:3
5.2 HAGLROS:3