Transcript: H19:16

Basic information

LNCipedia transcript ID: H19:16 
LNCipedia gene ID: H19
Location (hg38): chr11:1995688-1996467
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 524 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000447298; ENST00000447298.1; H19-014; OTTHUMT00000142907.3; NONHSAT017474
Alternative gene names: ENSG00000130600; H19; ENSG00000130600.9; OTTHUMG00000012477.4; ENSG00000130600.11; ENSG00000130600.15; D11S813E; ASM; ASM1; NCRNA00008; LINC00008; ENSG00000130600.16; ENSG00000130600.17


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.8531 non-coding 
CPAT coding probability 17.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
H19:16 no no no no

Available literature

  1. Han (2016), Circulating long noncoding RNA GAS5 as a potential biomarker in breast cancer for assessing the surgical effects., Tumour Biol.
  2. Jiang (2016), Increased level of H19 long noncoding RNA promotes invasion, angiogenesis, and stemness of glioblastoma cells., J. Neurosurg.
  3. Kanduri (2016), Long noncoding RNAs: Lessons from genomic imprinting., Biochim. Biophys. Acta
  4. Liu (2016), H19-derived miR-675 contributes to bladder cancer cell proliferation by regulating p53 activation., Tumour Biol.
  5. Matouk (2016), The role of the oncofetal H19 lncRNA in tumor metastasis: orchestrating the EMT-MET decision., Oncotarget
  6. Wang (2016), Differential lncRNA‑mRNA co‑expression network analysis revealing the potential regulatory roles of lncRNAs in myocardial infarction., Mol Med Rep
  7. Xie (2016), Long non-coding RNAs in colorectal cancer., Oncotarget
  8. Zhang (2016), Long non-coding RNA chromogenic in situ hybridisation signal pattern correlation with breast tumour pathology., J. Clin. Pathol.
  9. Zhang (2016), c-Myc-regulated long non-coding RNA H19 indicates a poor prognosis and affects cell proliferation in non-small-cell lung cancer., Tumour Biol.
  10. Zhang (2016), Erratum to: c-Myc-regulated long non-coding RNA H19 indicates a poor prognosis and affects cell proliferation in non-small-cell lung cancer., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C11orf89-2:13
3.1 lnc-C11orf89-2:13
4.0 H19:16
4.1 H19:16
5.0 H19:16
5.1 H19:16
5.2 H19:16

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