Transcript: H19:1

Basic information

LNCipedia transcript ID: H19:1 
LNCipedia gene ID: H19
Location (hg38): chr11:1995176-2001710
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2767 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT017461
Alternative gene names: D11S813E; ASM; ASM1; NCRNA00008; LINC00008


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.0087 non-coding 
CPAT coding probability 96.34% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
H19:1 no no no no

Available literature

  1. Han (2016), Circulating long noncoding RNA GAS5 as a potential biomarker in breast cancer for assessing the surgical effects., Tumour Biol.
  2. Jiang (2016), Increased level of H19 long noncoding RNA promotes invasion, angiogenesis, and stemness of glioblastoma cells., J. Neurosurg.
  3. Kanduri (2016), Long noncoding RNAs: Lessons from genomic imprinting., Biochim. Biophys. Acta
  4. Liu (2016), H19-derived miR-675 contributes to bladder cancer cell proliferation by regulating p53 activation., Tumour Biol.
  5. Matouk (2016), The role of the oncofetal H19 lncRNA in tumor metastasis: orchestrating the EMT-MET decision., Oncotarget
  6. Wang (2016), Differential lncRNA‑mRNA co‑expression network analysis revealing the potential regulatory roles of lncRNAs in myocardial infarction., Mol Med Rep
  7. Xie (2016), Long non-coding RNAs in colorectal cancer., Oncotarget
  8. Zhang (2016), Long non-coding RNA chromogenic in situ hybridisation signal pattern correlation with breast tumour pathology., J. Clin. Pathol.
  9. Zhang (2016), c-Myc-regulated long non-coding RNA H19 indicates a poor prognosis and affects cell proliferation in non-small-cell lung cancer., Tumour Biol.
  10. Zhang (2016), Erratum to: c-Myc-regulated long non-coding RNA H19 indicates a poor prognosis and affects cell proliferation in non-small-cell lung cancer., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C11orf89-2:15
4.0 H19:1
4.1 H19:1
5.0 H19:1
5.1 H19:1
5.2 H19:1

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