Transcript: GSEC:10

Basic information

LNCipedia transcript ID: GSEC:10 
LNCipedia gene ID: GSEC
Location (hg38): chr11:126341717-126355587
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 752 bp
Exons: 2
Sources: Refseq - Dec 2014
Alternative transcript names: NR_033839
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.4002 non-coding 
CPAT coding probability 12.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GSEC:10 yes no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-712L6.5.1-2:3
4.0 lnc-RP11-712L6.5.1-2:3
4.1 lnc-RP11-712L6.5.1-2:3
5.0 lnc-RP11-712L6.5.1-2:3
5.1 GSEC:4
5.2 GSEC:10